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InterPro Inc hidden markov model (hmm)
Hidden Markov Model (Hmm), supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/hidden+markov+model+(hmm)/hidden+markov+models/pmc12256548-43-2-13
Average 90 stars, based on 1 article reviews
hidden markov model (hmm) - by Bioz Stars, 2026-09
90/100 stars

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Article Title: The N6-methyladenosine reader ECT1 regulates seed germination via gibberellic acid- and phytochrome B-mediated signaling.
Article Snippet: Seed germination, a pivotal stage in plant growth, is governed by phytohormones such as gibberellic acid (GA) and influenced by phytochromes, which are key photoreceptors in plants.. The N-methyladenosine (mA) RNA modification is fundamental to plant growth and development.. However, the molecular mechanisms underlying the regulation of PHYTOCHROME B (phyB) and the function of mA signaling in GA-mediated seed germination remain elusive.

Article Title: Chloride-dependent plasma membrane hyperpolarization confers superior salinity tissue tolerance in wild rice Oryza coarctata
Article Snippet: The number of isoforms of CLC, NHX, and KAT/AKT gene families was identified based on conserved domains using Hidden Markov Model (HMM) profiles from the InterPro database (CLC, PF00654; NHX, PF00999; KAT/ AKT, PTHR45743) and analyzed with hmmer (version 3.4) under default parameters [34,35].

Article Title: Domain characteristics, classification and expression profiles in response to various abiotic stresses of four HD-Zip subfamilies in tea plant
Article Snippet: Subsequently, the Hidden Markov Model (HMM) profiles of HD domain (PF00046) and LZ domain (PF02183) were downloaded from the Interpro database ( http://www.ebi.ac.uk/interpro/ ) [ ] and were used as queries to obtain homologous sequences from the tea plant genome by using the Simple HMM Search of TBtools [ ].

Article Title: Genome-wide identification, expression analysis, and response to abiotic stress of the phosphate transporter gene family in cucumber ( Cucumis sativus L.)
Article Snippet: Subsequently, the Hidden Markov Model (HMM) files corresponding to these accession numbers were downloaded from the Pfam plugin in InterPro ( https://www.ebi.ac.uk/interpro/ ).

Article Title: The Evolution and expression analysis of USP gene family in Solanum
Article Snippet: The hidden Markov model (HMM) for the USP domain was downloaded from the InterPro database ( http://pfam-legacy.xfam.org/ , available on November 10, 2024) with accession number PF00582.

Article Title: Genome-Wide Identification, Characterization, and Expression Analysis of the U-Box Gene Family in Cucumber ( Cucumis sativus )
Article Snippet: The Hidden Markov Model (HMM) profile corresponding to the U-box domain (Pfam: PF04564) was acquired from the InterPro database ( https://www.ebi.ac.uk/interpro/ , last accessed: 8 November 2024).

Article Title: The Alpha/Beta-Hydrolase Fold Superfamily in Brassica napus: Expression Profiles and Functional Implications of Clade-3 BnABH Proteins in Response to Abiotic Stress
Article Snippet: Subsequently, the Hidden Markov Model (HMM) profile of the ABH domain, encompassing PF12697, PF00561, PF07859, PF12695, PF06259, and PF12715, was downloaded from the InterPro database ( https://www.ebi.ac.uk/interpro/ accessed on 20 March 2023).

Article Title: Genome-Wide Identification of 109 NAC Genes and Dynamic Expression Profiles Under Cold Stress in Madhuca longifolia
Article Snippet: The Hidden Markov Model (HMM) file for the NAM domain (PF02365) was retrieved from the InterPro website ( https://www.ebi.ac.uk/interpro/ accessed on 17 November 2024) [ ].



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